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UBE2D3-AS1 UBE2D3 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 105377348, updated on 13-Mar-2024

Summary

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Official Symbol
UBE2D3-AS1provided by HGNC
Official Full Name
UBE2D3 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:54095
See related
AllianceGenome:HGNC:54095
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 3.8), brain (RPKM 1.5) and 24 other tissues See more
Orthologs
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Genomic context

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Location:
4q24
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (102828055..102844106)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (106142083..106158095)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (103749212..103765263)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene mannosidase beta Neighboring gene WD repeat domain 12 pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chr4:103675856-103676033 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21757 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15599 Neighboring gene uncharacterized LOC102723704 Neighboring gene uncharacterized LOC124900743 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:103746355-103747554 Neighboring gene ubiquitin conjugating enzyme E2 D3 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:103748137-103748698 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:103748699-103749260 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21760 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21761 Neighboring gene RNA, U7 small nuclear 151 pseudogene Neighboring gene small nucleolar RNA U13 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21762 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15602 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15603 Neighboring gene CDGSH iron sulfur domain 2 Neighboring gene solute carrier family 9 member B1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Developmental changes in the transcriptome of human cerebral cortex tissue: long noncoding RNA transcripts. Lipovich L, et al. Cereb Cortex, 2014 Jun. PMID 23377288
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

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Homology

Clone Names

  • FLJ36037

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_131185.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC018797, AK093356, BG058478, HY045516

  2. NR_131186.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' terminal exon and lacks an internal exon, resulting in a shorter transcript than variant 1.
    Source sequence(s)
    AC018797, AK093356, BG058478, CD368268

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    102828055..102844106
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    106142083..106158095
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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