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LINC02267 long intergenic non-protein coding RNA 2267 [ Homo sapiens (human) ]

Gene ID: 105377338, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02267provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2267provided by HGNC
Primary source
HGNC:HGNC:53181
See related
AllianceGenome:HGNC:53181
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
4q22.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (96310703..96818415)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (99625824..100133222)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (97231854..97739566)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene talin 2 pseudogene Neighboring gene RNA, U6 small nuclear 34, pseudogene Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:97148613-97149159 Neighboring gene NANOG hESC enhancer GRCh37_chr4:97173200-97173733 Neighboring gene NANOG hESC enhancer GRCh37_chr4:97181156-97181836 Neighboring gene RN7SK pseudogene 28 Neighboring gene MPRA-validated peak5077 silencer Neighboring gene MPRA-validated peak5080 silencer Neighboring gene MPRA-validated peak5081 silencer Neighboring gene MPRA-validated peak5082 silencer Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:97657459-97658128 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:97664441-97665640 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:97783525-97784026 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:97784027-97784526 Neighboring gene cytochrome c oxidase subunit 7A2 pseudogene 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:98045039-98045539 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:98060958-98062157 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:98062416-98062997 Neighboring gene uncharacterized LOC124900737

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_147149.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BG527592, BX356497

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    96310703..96818415
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    99625824..100133222
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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