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VAMP9P vesicle associated membrane protein 9, pseudogene [ Homo sapiens (human) ]

Gene ID: 105377307, updated on 16-Jan-2024

Summary

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Official Symbol
VAMP9Pprovided by HGNC
Official Full Name
vesicle associated membrane protein 9, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:53817
See related
Ensembl:ENSG00000293501 AllianceGenome:HGNC:53817
Gene type
pseudo
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
4q21.22
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (82284971..82297510)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (85614217..85626756)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene RNA, U6 small nuclear 499, pseudogene Neighboring gene uncharacterized LOC105377308 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15526 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15527 Neighboring gene bridging integrator 2 pseudogene 1 Neighboring gene MPRA-validated peak5068 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21658 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:83287023-83287694 Neighboring gene heterogeneous nuclear ribonucleoprotein D Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21659 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15528 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21660 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:83301399-83301972 Neighboring gene HNRNPD divergent transcript

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Forty-four novel protein-coding loci discovered using a proteomics informed by transcriptomics (PIT) approach in rat male germ cells. Chocu S, et al. Biol Reprod, 2014 Nov. PMID 25210130
  2. Toward a complete human genome sequence. Sanger Center, et al. Genome Res, 1998 Nov. PMID 9847074

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

General gene information

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Other Names

  • TCONS_00008138

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    82284971..82297510
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_938935.3 RNA Sequence

    Related
    ENST00000640685.1

  2. XR_938934.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    85614217..85626756
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007074761.1 RNA Sequence

  2. XR_007074760.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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