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LINC02469 long intergenic non-protein coding RNA 2469 [ Homo sapiens (human) ]

Gene ID: 105377301, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02469provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2469provided by HGNC
Primary source
HGNC:HGNC:53408
See related
AllianceGenome:HGNC:53408
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
4q21.21
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (79663707..79696454)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 989 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:80479685-80480682 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:80480683-80481678 Neighboring gene uncharacterized LOC107986294 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:80506911-80507506 Neighboring gene olfactory receptor family 7 subfamily E member 94 pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chr4:80582899-80583069 Neighboring gene uncharacterized LOC105377302 Neighboring gene Sharpr-MPRA regulatory region 5843 Neighboring gene small nucleolar RNA SNORA75 Neighboring gene prostate cancer associated transcript 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000004.12 Chromosome 4 Reference GRCh38.p14 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    79663707..79696454
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007058159.1 RNA Sequence

  2. XR_007058158.1 RNA Sequence

  3. XR_007058157.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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