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LINC02050 long intergenic non-protein coding RNA 2050 [ Homo sapiens (human) ]

Gene ID: 105377175, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02050provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2050provided by HGNC
Primary source
HGNC:HGNC:52890
See related
Ensembl:ENSG00000242781 AllianceGenome:HGNC:52890
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02050 in Genome Data Viewer
Location:
3p12.2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (80764897..80789388)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (80819507..80843957)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (80814048..80838539)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377177 Neighboring gene uncharacterized LOC124906335 Neighboring gene uncharacterized LOC105377176 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:80782659-80782903 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:80819689-80820241 Neighboring gene uncharacterized LOC105377174 Neighboring gene long intergenic non-protein coding RNA 2027 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:81105459-81106192 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:81106193-81106925

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_147143.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA609332, BX116815
    Related
    ENST00000473938.1

  2. NR_147144.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA405141, AA609332, BX116815
    Related
    ENST00000667434.1

  3. NR_147145.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA609332, HY031244
    Related
    ENST00000658456.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    80764897..80789388
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    80819507..80843957
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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