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CFAP20DC-DT CFAP20DC divergent transcript [ Homo sapiens (human) ]

Gene ID: 105377110, updated on 10-Oct-2023

Summary

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Official Symbol
CFAP20DC-DTprovided by HGNC
Official Full Name
CFAP20DC divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55618
See related
AllianceGenome:HGNC:55618
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
3p14.2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (59086840..59811310)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (59090591..59855502)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377109 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:58792456-58792956 Neighboring gene CFAP20DC antisense RNA 1 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:58828169-58828785 Neighboring gene CFAP20 domain containing Neighboring gene MED14-independent group 3 enhancer GRCh37_chr3:58859831-58861030 Neighboring gene FAM3 metabolism regulating signaling molecule D Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:58876285-58876824 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:58884619-58885120 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20014 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr3:58940883-58941482 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr3:58983704-58984903 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:59017398-59018230 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:59044085-59044335 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:59113978-59114502 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:59114503-59115026 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20015 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14492 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14493 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20016 Neighboring gene Sharpr-MPRA regulatory region 3507 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:59599597-59599768 Neighboring gene SNRPB2 pseudogene 1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:59703433-59704161 Neighboring gene hCG1813818 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr3:59784329-59785528 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:59793929-59794564 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:59795199-59795832 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:59795833-59796466 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr3:59803658-59804857 Neighboring gene uncharacterized LOC105377113 Neighboring gene uncharacterized LOC105377112 Neighboring gene fragile histidine triad diadenosine triphosphatase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    59086840..59811310
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_002959675.2 RNA Sequence

  2. XR_007095934.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    59090591..59855502
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007073545.1 RNA Sequence

  2. XR_007073546.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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