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LINC02030 long intergenic non-protein coding RNA 2030 [ Homo sapiens (human) ]

Gene ID: 105377098, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02030provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2030provided by HGNC
Primary source
HGNC:HGNC:52864
See related
AllianceGenome:HGNC:52864
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
3p14.3
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (55226855..55300947)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (55261179..55335270)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene calcium voltage-gated channel auxiliary subunit alpha2delta 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:54973116-54973616 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:54986884-54987876 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:54987877-54988869 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:54989863-54990854 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:54992683-54993184 Neighboring gene VISTA enhancer hs1436 Neighboring gene leucine rich repeats and transmembrane domains 1 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr3:55096424-55097039 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:55113410-55113654 Neighboring gene uncharacterized LOC124906243 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:55183044-55183208 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr3:55194201-55195400 Neighboring gene long intergenic non-protein coding RNA 2017 Neighboring gene uncharacterized LOC124909383 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:55508124-55508358 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:55515943-55516553 Neighboring gene WNT5A antisense RNA 1 Neighboring gene Wnt family member 5A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Preliminary RNA-Seq Analysis of Long Non-Coding RNAs Expressed in Human Term Placenta. Majewska M, et al. Int J Mol Sci, 2018 Jun 27. PMID 29954144, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183740.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092059, AC121248

  2. NR_183741.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092059, AC121248

  3. NR_183742.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092059, AC121248

  4. NR_183743.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092059, AC121248

  5. NR_183744.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092059, AC121248

  6. NR_183745.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092059, AC121248

  7. NR_183746.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092059, AC121248

  8. NR_183747.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092059, AC121248

  9. NR_183748.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092059, AC121248

  10. NR_183749.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092059, AC121248

  11. NR_183750.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092059, AC121248

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    55226855..55300947
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    55261179..55335270
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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