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LOC105377043 uncharacterized LOC105377043 [ Homo sapiens (human) ]

Gene ID: 105377043, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105377043
Gene description
uncharacterized LOC105377043
See related
Ensembl:ENSG00000231873
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
3p22.1
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (40719859..40911362)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (40734909..40926722)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124906229 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14234 Neighboring gene uncharacterized LOC124909370 Neighboring gene high mobility group nucleosomal binding domain 2 pseudogene 24 Neighboring gene MPRA-validated peak4616 silencer Neighboring gene ribosomal protein S27 pseudogene 4 Neighboring gene NANOG hESC enhancer GRCh37_chr3:40885161-40886029 Neighboring gene uncharacterized LOC124906230 Neighboring gene NANOG hESC enhancer GRCh37_chr3:40912794-40913474 Neighboring gene NANOG hESC enhancer GRCh37_chr3:40961458-40962007 Neighboring gene Sharpr-MPRA regulatory region 10975 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19721 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:41010264-41010764 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:41012603-41013802 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:41037247-41037747 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:41039383-41040340 Neighboring gene Sharpr-MPRA regulatory region 4350 Neighboring gene uncharacterized LOC105377045 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19722 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr3:41137060-41138259 Neighboring gene Sharpr-MPRA regulatory region 10354 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19723 Neighboring gene mitochondrial ribosomal protein S31 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    40719859..40911362
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007095886.1 RNA Sequence

    Related
    ENST00000665970.1

  2. XR_007095885.1 RNA Sequence

  3. XR_940766.3 RNA Sequence

  4. XR_007095884.1 RNA Sequence

  5. XR_007095883.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    40734909..40926722
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007073461.1 RNA Sequence

  2. XR_007073459.1 RNA Sequence

  3. XR_007073460.1 RNA Sequence

  4. XR_007073458.1 RNA Sequence

  5. XR_007073457.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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