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PDCD6IP-DT PDCD6IP divergent transcript [ Homo sapiens (human) ]

Gene ID: 105377023, updated on 10-Oct-2023

Summary

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Official Symbol
PDCD6IP-DTprovided by HGNC
Official Full Name
PDCD6IP divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55244
See related
Ensembl:ENSG00000271643 AllianceGenome:HGNC:55244
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in thyroid (RPKM 1.9), testis (RPKM 1.5) and 25 other tissues See more
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Genomic context

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Location:
3p22.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (33793644..33798519, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (33794376..33799251, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene cytoplasmic linker associated protein 2 Neighboring gene cytochrome c oxidase subunit 6C pseudogene 10 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:33618786-33619296 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:33619297-33619807 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:33620187-33620768 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19650 Neighboring gene MPRA-validated peak4600 silencer Neighboring gene MPRA-validated peak4601 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14191 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19651 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14192 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr3:33830741-33831638 Neighboring gene SDA1 domain containing 1 pseudogene 3 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:33840285-33840818 Neighboring gene programmed cell death 6 interacting protein Neighboring gene uncharacterized LOC105377024

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183730.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC112220

  2. NR_183731.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC112220
    Related
    ENST00000604982.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    33793644..33798519 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    33794376..33799251 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases