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LINC02084 long intergenic non-protein coding RNA 2084 [ Homo sapiens (human) ]

Gene ID: 105377006, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02084provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2084provided by HGNC
Primary source
HGNC:HGNC:52934
See related
AllianceGenome:HGNC:52934
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in spleen (RPKM 1.9), lymph node (RPKM 1.7) and 15 other tissues See more
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Genomic context

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See LINC02084 in Genome Data Viewer
Location:
3p24.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (27712919..27714400)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (27714424..27716093)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124906221 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:27678933-27679535 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:27696095-27696881 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14152 Neighboring gene KIAA1143 pseudogene 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:27754223-27754908 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr3:27755580-27756476 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14153 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:27765995-27766869 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:27769715-27770646 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:27770647-27771576 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:27771577-27772508 Neighboring gene eomesodermin Neighboring gene long intergenic non-protein coding RNA 1980 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:27862672-27863220 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:27863221-27863768 Neighboring gene MPRA-validated peak4580 silencer Neighboring gene long intergenic non-protein coding RNA 1981

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    27712919..27714400
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007095851.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    27714424..27716093
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007073383.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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