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KAZN-AS1 KAZN antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 105376762, updated on 10-Oct-2023

Summary

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Official Symbol
KAZN-AS1provided by HGNC
Official Full Name
KAZN antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:53610
See related
Ensembl:ENSG00000234593 AllianceGenome:HGNC:53610
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See KAZN-AS1 in Genome Data Viewer
Location:
1p36.21
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (14348955..14419973, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (13791124..13862125, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (14675450..14746469, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene kazrin, periplakin interacting protein Neighboring gene uncharacterized LOC107985467 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:14585807-14586306 Neighboring gene uncharacterized LOC124903847 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:14672178-14673377 Neighboring gene MPRA-validated peak78 silencer Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:14696541-14697219 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr1:14699385-14700250 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:14730198-14731026 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:14763664-14763765 Neighboring gene uncharacterized LOC124903850 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:14843423-14844622 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 224 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 225 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 226 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:14898509-14899073 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 292 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:14955532-14956032 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:14956033-14956533 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:14964395-14964896 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 227 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:15004649-15004813 Neighboring gene tubulin folding cofactor A pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Comprehensive transcriptome analysis identifies novel molecular subtypes and subtype-specific RNAs of triple-negative breast cancer. Liu YR, et al. Breast Cancer Res, 2016 Mar 15. PMID 26975198, Free PMC Article
  2. Creation of genome-wide protein expression libraries using random activation of gene expression. Harrington JJ, et al. Nat Biotechnol, 2001 May. PMID 11329013
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_149058.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL359873, BG185059, BG210591, DB029264
    Related
    ENST00000657979.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    14348955..14419973 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    13791124..13862125 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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