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LINC02722 long intergenic non-protein coding RNA 2722 [ Homo sapiens (human) ]

Gene ID: 105376619, updated on 10-Dec-2024

Summary

Official Symbol
LINC02722provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2722provided by HGNC
Primary source
HGNC:HGNC:54239
See related
Ensembl:ENSG00000254508 AllianceGenome:HGNC:54239
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC02722 in Genome Data Viewer
Location:
11p13
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (33804768..33805680)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (33941829..33942748)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (33826314..33827226)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene FBXO3 divergent transcript Neighboring gene Spi-C transcription factor pseudogene 1 Neighboring gene long intergenic non-protein coding RNA 2721 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3244 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:33879525-33879698 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3245 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3246 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3247 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3248 Neighboring gene LIM domain only 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4586

Genomic regions, transcripts, and products

Expression

  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187444.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC113192
    Related
    ENST00000534666.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    33804768..33805680
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    33941829..33942748
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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