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LINC02699 long intergenic non-protein coding RNA 2699 [ Homo sapiens (human) ]

Gene ID: 105376596, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02699provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2699provided by HGNC
Primary source
HGNC:HGNC:54213
See related
AllianceGenome:HGNC:54213
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02699 in Genome Data Viewer
Location:
11p14.3
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (25453600..25924451)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (25593334..26064876)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene NANOG hESC enhancer GRCh37_chr11:24659075-24659576 Neighboring gene NANOG hESC enhancer GRCh37_chr11:24701323-24702247 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr11:24718961-24720160 Neighboring gene leucine zipper protein 2 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr11:24768484-24769683 Neighboring gene NANOG hESC enhancer GRCh37_chr11:24777043-24777544 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:25060809-25060990 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:25115650-25116150 Neighboring gene N-acetylneuraminic acid phosphatase pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chr11:25509719-25510220 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:25523381-25523976 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:25600863-25601516 Neighboring gene V-type proton ATPase subunit G 1-like Neighboring gene ribosomal protein L36a pseudogene 40 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:25933512-25933749 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:25965255-25965780 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:25965781-25966304 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr11:25987090-25988289 Neighboring gene NEDD8 activating enzyme E1 subunit 1 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4540 Neighboring gene ANO3 antisense RNA 1 Neighboring gene anoctamin 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183692.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC090592

  2. NR_183693.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022253, AC090592, AC100770

  3. NR_183694.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013799, AC022253, AC100770

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    25453600..25924451
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    25593334..26064876
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases