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LINC02718 long intergenic non-protein coding RNA 2718 [ Homo sapiens (human) ]

Gene ID: 105376592, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02718provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2718provided by HGNC
Primary source
HGNC:HGNC:54235
See related
AllianceGenome:HGNC:54235
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02718 in Genome Data Viewer
Location:
11p14.3
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (22829414..23205797)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (22950076..23326528)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4533 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4534 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr11:22646933-22647832 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr11:22656570-22657334 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3206 Neighboring gene FA complementation group F Neighboring gene growth arrest specific 2 Neighboring gene RNA, 5S ribosomal pseudogene 338 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4537 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4538 Neighboring gene Sharpr-MPRA regulatory region 5411 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr11:22813641-22814840 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3207 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4539 Neighboring gene Sharpr-MPRA regulatory region 14851 Neighboring gene coiled-coil domain containing 179 Neighboring gene small VCP interacting protein Neighboring gene uncharacterized LOC124902646 Neighboring gene NANOG hESC enhancer GRCh37_chr11:22944198-22944709 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:23054822-23055322 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:23055323-23055823 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:23210858-23211394 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr11:23325332-23326531 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_20960 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr11:23380849-23382048 Neighboring gene programmed cell death 2 like pseudogene Neighboring gene WIZ pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187205.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC006299, AC022994, AC090092

  2. NR_187206.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC006299, AC022994, AC090092

  3. NR_187207.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC006299, AC022994, AC090092

  4. NR_187208.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC006299, AC022994, AC090092

  5. NR_187209.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC006299, AC022994, AC090092

  6. NR_187210.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC006299, AC022994, AC090092

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    22829414..23205797
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    22950076..23326528
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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