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ZNF25-DT ZNF25 divergent transcript [ Homo sapiens (human) ]

Gene ID: 105376499, updated on 10-Oct-2023

Summary

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Official Symbol
ZNF25-DTprovided by HGNC
Official Full Name
ZNF25 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:54109
See related
AllianceGenome:HGNC:54109
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.4) See more
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Genomic context

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Location:
10p11.21-p11.1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (37976755..38004555)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (38020756..38048395)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:38186151-38186679 Neighboring gene zinc finger protein 33C, pseudogene Neighboring gene zinc finger protein 25 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3271 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2310 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3272 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:38274009-38274157 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3273 Neighboring gene zinc finger protein 33A Neighboring gene RNA, U6 small nuclear 795, pseudogene Neighboring gene eukaryotic translation initiation factor 3 subunit L pseudogene 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    37976755..38004555
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_930830.4 RNA Sequence

  2. XR_001747428.2 RNA Sequence

  3. XR_001747429.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    38020756..38048395
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007080837.1 RNA Sequence

  2. XR_007080838.1 RNA Sequence

  3. XR_007080839.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases