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MPP7-DT MPP7 divergent transcript [ Homo sapiens (human) ]

Gene ID: 105376466, updated on 10-Oct-2023

Summary

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Official Symbol
MPP7-DTprovided by HGNC
Official Full Name
MPP7 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:54139
See related
AllianceGenome:HGNC:54139
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
10p12.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (28303169..28306271)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (28334259..28337361)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene MED14-independent group 3 enhancer GRCh37_chr10:28377736-28378935 Neighboring gene MAGUK p55 scaffold protein 7 Neighboring gene small nucleolar RNA, C/D box 130 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr10:28408124-28409323 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:28500607-28501201 Neighboring gene Sharpr-MPRA regulatory region 10737 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2249 Neighboring gene microRNA 8086 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2250 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3190 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3191 Neighboring gene zinc finger protein 101 pseudogene 1 Neighboring gene small nucleolar RNA U3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    28303169..28306271
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_930772.3 RNA Sequence

  2. XR_930771.3 RNA Sequence

  3. XR_930770.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    28334259..28337361
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007080771.1 RNA Sequence

  2. XR_007080772.1 RNA Sequence

  3. XR_007080770.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases