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LINC02642 long intergenic non-protein coding RNA 2642 [ Homo sapiens (human) ]

Gene ID: 105376388, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02642provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2642provided by HGNC
Primary source
HGNC:HGNC:54124
See related
Ensembl:ENSG00000232591 AllianceGenome:HGNC:54124
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
10p14
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (7444292..7472849, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (7444253..7472832, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene Scm like with four mbt domains 2 Neighboring gene uncharacterized LOC124902372 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:7403871-7405070 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:7407161-7407660 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:7449871-7450766 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2975 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2112 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:7453245-7454165 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:7454166-7455085 Neighboring gene uncharacterized LOC124902373 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:7487564-7487770 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:7488827-7489326 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2977 Neighboring gene NANOG hESC enhancer GRCh37_chr10:7500249-7500813 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2978 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2979 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2980 Neighboring gene Sharpr-MPRA regulatory region 3847 Neighboring gene RNA, U6 small nuclear 535, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2113 Neighboring gene uncharacterized LOC105376390

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_184107.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139125

  2. NR_184108.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139125

  3. NR_184109.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139125

  4. NR_184114.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139125

  5. NR_184115.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139125

  6. NR_184116.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139125

  7. NR_184117.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139125

  8. NR_184118.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139125

  9. NR_184119.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139125

  10. NR_184122.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139125
    Related
    ENST00000670632.2

  11. NR_184123.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139125

  12. NR_184124.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139125
    Related
    ENST00000660269.1

  13. NR_184125.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139125

  14. NR_184126.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139125

  15. NR_184127.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139125

  16. NR_184128.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139125

  17. NR_184129.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139125

  18. NR_184130.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139125

  19. NR_184131.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139125

  20. NR_184132.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139125

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    7444292..7472849 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    7444253..7472832 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases