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LINC02247 long intergenic non-protein coding RNA 2247 [ Homo sapiens (human) ]

Gene ID: 105376310, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02247provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2247provided by HGNC
Primary source
HGNC:HGNC:53140
See related
Ensembl:ENSG00000223729 AllianceGenome:HGNC:53140
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02247 in Genome Data Viewer
Location:
9q34.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (134293931..134295397, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (146508918..146510384, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (137185777..137187243, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107987039 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29275 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137159240-137159872 Neighboring gene uncharacterized LOC124902299 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137165779-137166534 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137186973-137187694 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137210088-137210946 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137210947-137211805 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20478 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20479 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20480 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:137219587-137220516 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:137220517-137221446 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137225116-137225782 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137225783-137226449 Neighboring gene NFE2L2 motif-containing MPRA enhancer 298 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137237611-137238182 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:137241753-137242539 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:137242540-137243325 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137243326-137244112 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137244113-137244897 Neighboring gene retinoid X receptor alpha Neighboring gene RXRA intron CAGE-defined high expression enhancer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137269547-137270338 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137270339-137271130 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:137271131-137271922 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29276 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20481 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:137276487-137276988 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29277 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29278 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29279 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29280 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29281 Neighboring gene Sharpr-MPRA regulatory region 14205 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29282 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29283 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:137288759-137289667 Neighboring gene microRNA 4669 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137292875-137293376 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137293377-137293876 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:137298902-137299714 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:137299715-137300527 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:137300528-137301339 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137312909-137313409 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137325655-137326156 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137326157-137326656 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137328808-137329376 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137335184-137335762 Neighboring gene uncharacterized LOC105376311 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:137338907-137339314 Neighboring gene Sharpr-MPRA regulatory region 11314 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137346195-137347030 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:137347374-137348311 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:137348312-137349248 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137353764-137354264 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:137367387-137367888

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Distinct expression profiles of lncRNAs between early-onset preeclampsia and preterm controls. Long W, et al. Clin Chim Acta, 2016 Dec 1. PMID 27816668

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146518.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL354796, W95816
    Related
    ENST00000417135.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    134293931..134295397 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    146508918..146510384 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases