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LINC02834 long intergenic non-protein coding RNA 2834 [ Homo sapiens (human) ]

Gene ID: 105376124, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02834provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2834provided by HGNC
Primary source
HGNC:HGNC:54368
See related
Ensembl:ENSG00000285686 AllianceGenome:HGNC:54368
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
9q21.33
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (86669272..86708305, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (98820523..98859575, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102724080 Neighboring gene RNA, U2 small nuclear 36, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28517 Neighboring gene uncharacterized LOC105376123 Neighboring gene NANOG hESC enhancer GRCh37_chr9:89230395-89230896 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:89254374-89254874 Neighboring gene uncharacterized LOC124902195 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr9:89406557-89407756 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:89453773-89454274 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:89555636-89556336 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19998 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19999 Neighboring gene growth arrest specific 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    86669272..86708305 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_930070.3 RNA Sequence

    Related
    ENST00000649193.1

  2. XR_930071.1 RNA Sequence

  3. XR_930069.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    98820523..98859575 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007079681.1 RNA Sequence

  2. XR_007079683.1 RNA Sequence

  3. XR_007079682.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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