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LINC02839 long intergenic non-protein coding RNA 2839 [ Homo sapiens (human) ]

Gene ID: 105375929, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02839provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2839provided by HGNC
Primary source
HGNC:HGNC:54373
See related
Ensembl:ENSG00000254123 AllianceGenome:HGNC:54373
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02839 in Genome Data Viewer
Location:
8q21.13
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (82108567..82160513, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (82540256..82592198, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein A1 pseudogene 36 Neighboring gene MPRA-validated peak7089 silencer Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:82753494-82754426 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27586 Neighboring gene sorting nexin 16 Neighboring gene long intergenic non-protein coding RNA 2235 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:82777682-82778503 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:82796025-82796191 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:82807716-82808490 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr8:82810041-82810814 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:82850908-82851478 Neighboring gene uncharacterized LOC105375930 Neighboring gene heterogeneous nuclear ribonucleoprotein A1 pseudogene 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183479.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC027701, AC127034
    Related
    ENST00000520988.1

  2. NR_183481.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC027701, AC127034
    Related
    ENST00000654599.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    82108567..82160513 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    82540256..82592198 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases