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LOC105375924 uncharacterized LOC105375924 [ Homo sapiens (human) ]

Gene ID: 105375924, updated on 25-Oct-2023

Summary

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Gene symbol
LOC105375924
Gene description
uncharacterized LOC105375924
See related
Ensembl:ENSG00000253214
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
8q21.13
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (81147993..81164605)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (81579605..81596205)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986894 Neighboring gene HNF4 motif-containing MPRA enhancer 108 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27570 Neighboring gene uncharacterized LOC124901967 Neighboring gene phosphoprotein membrane anchor with glycosphingolipid microdomains 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27571 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27572 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27573 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27574 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27575 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27576 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19326 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27577 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27578 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27579 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19327 Neighboring gene NANOG hESC enhancer GRCh37_chr8:82108601-82109175 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27580 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:82192414-82193248 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:82193249-82194083 Neighboring gene ubiquitin conjugating enzyme E2 H pseudogene 1 Neighboring gene lncRNA associated with lymph node metastasis in cervical cancer Neighboring gene fatty acid binding protein 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_188113.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079209

  2. NR_188114.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079209

  3. NR_188115.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079209
    Related
    ENST00000687519.1

  4. NR_188116.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079209
    Related
    ENST00000691691.1

  5. NR_188117.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079209
    Related
    ENST00000519412.2

  6. NR_188118.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079209
    Related
    ENST00000521953.2

  7. NR_188119.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079209
    Related
    ENST00000657588.1

  8. NR_188120.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079209
    Related
    ENST00000667002.1

  9. NR_188121.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079209
    Related
    ENST00000652920.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    81147993..81164605
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    81579605..81596205
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases