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CERNA3 competing endogenous lncRNA 3 for miR-645 [ Homo sapiens (human) ]

Gene ID: 105375847, updated on 10-Oct-2023

Summary

Official Symbol
CERNA3provided by HGNC
Official Full Name
competing endogenous lncRNA 3 for miR-645provided by HGNC
Primary source
HGNC:HGNC:53469
See related
Ensembl:ENSG00000253603 AllianceGenome:HGNC:53469
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CTA
Expression
Low expression observed in reference dataset See more
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Genomic context

Location:
8q12.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (56074592..56075274)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (56451594..56452276)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (56987151..56987833)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene proteasome 26S subunit, ATPase, 6 pseudogene 1 Neighboring gene ribosomal protein S20 Neighboring gene small nucleolar RNA, C/D box 54 Neighboring gene nucleophosmin 1 pseudogene 21 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:57025920-57026420 Neighboring gene MOS proto-oncogene, serine/threonine kinase

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_149110.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC107376
    Related
    ENST00000521403.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    56074592..56075274
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    56451594..56452276
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)