U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

XKR4-AS1 XKR4 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 105375843, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
XKR4-AS1provided by HGNC
Official Full Name
XKR4 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:56156
See related
Ensembl:ENSG00000254357
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 2.2) See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
8q12.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (55517187..55520978, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (55894461..55898256, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (56429746..56433537, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375844 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:56082878-56083063 Neighboring gene XK related 4 Neighboring gene Sharpr-MPRA regulatory region 131 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:56170973-56172172 Neighboring gene NANOG hESC enhancer GRCh37_chr8:56226088-56226589 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:56276417-56277111 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:56277806-56278500 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:56280453-56280954 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:56285036-56285662 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:56285663-56286288 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:56366282-56366665 Neighboring gene SET binding factor 1 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27373 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27374 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27375 Neighboring gene uncharacterized LOC105375845 Neighboring gene uncharacterized LOC105375846

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_134323.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA412543, AI018803, CR738863
    Related
    ENST00000522918.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    55517187..55520978 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    55894461..55898256 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases