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LOC105375523 uncharacterized LOC105375523 [ Homo sapiens (human) ]

Gene ID: 105375523, updated on 26-Oct-2023

Summary

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Gene symbol
LOC105375523
Gene description
uncharacterized LOC105375523
See related
Ensembl:ENSG00000232053
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
7q33
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (135980947..136439965)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (137288157..137747277)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375522 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:135469316-135469498 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:135483822-135484042 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:135531289-135531441 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18681 Neighboring gene RNA, U6 small nuclear 223, pseudogene Neighboring gene myotrophin Neighboring gene VISTA enhancer hs2077 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18682 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18683 Neighboring gene MPRA-validated peak6752 silencer Neighboring gene MPRA-validated peak6754 silencer Neighboring gene MPRA-validated peak6755 silencer Neighboring gene MPRA-validated peak6756 silencer Neighboring gene MPRA-validated peak6757 silencer Neighboring gene MPRA-validated peak6758 silencer Neighboring gene TRPC6 pseudogene 8 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26722 Neighboring gene MPRA-validated peak6760 silencer Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:136083954-136084620 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:136212537-136213037 Neighboring gene MPRA-validated peak6762 silencer Neighboring gene ZP3 pseudogene 2 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:136321846-136322829 Neighboring gene MPRA-validated peak6764 silencer Neighboring gene proteasome 26S subunit, ATPase 1 pseudogene 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

General gene information

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Clone Names

  • AC009784.3, AC024084.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187952.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009784, AC015987

  2. NR_187953.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009784, AC015987, AC024084

  3. NR_187954.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009784, AC015987, AC024084

  4. NR_187955.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009784, AC015987, AC024084

  5. NR_187956.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC024084, AC078845

  6. NR_187957.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009784, AC024084, AC078845

  7. NR_187958.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009784, AC024084

  8. NR_187959.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009784, AC024084
    Related
    ENST00000659747.1

  9. NR_187960.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009784, AC024084, AC078845

  10. NR_187961.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC024084, AC078845

  11. NR_187962.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009784, AC024084, AC078845

  12. NR_187963.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC024084, AC078845

  13. NR_187964.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009784, AC024084, AC078845

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    135980947..136439965
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    137288157..137747277
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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