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LOC105375026 uncharacterized LOC105375026 [ Homo sapiens (human) ]

Gene ID: 105375026, updated on 28-Oct-2023

Summary

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Gene symbol
LOC105375026
Gene description
uncharacterized LOC105375026
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.6) See more
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Genomic context

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Location:
6p21.31
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (33893129..33918200)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (33714324..33739398)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901306 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:33817822-33818352 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:33820767-33821549 Neighboring gene uncharacterized LOC105375027 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24370 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:33830758-33831258 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:33846380-33846880 Neighboring gene long intergenic non-protein coding RNA 1016 Neighboring gene uncharacterized LOC107986590 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24371 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24372 Neighboring gene microRNA 7159 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24373 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24374 Neighboring gene uncharacterized LOC124901307 Neighboring gene Sharpr-MPRA regulatory region 1001 Neighboring gene uncharacterized LOC124901308

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. Girard A, et al. Nature, 2006 Jul 13. PMID 16751776

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187840.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL138889

  2. NR_187841.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL138889

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    33893129..33918200
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    33714324..33739398
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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