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LOC105374949 uncharacterized LOC105374949 [ Homo sapiens (human) ]

Gene ID: 105374949, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105374949
Gene description
uncharacterized LOC105374949
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105374949 in Genome Data Viewer
Location:
6p22.3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (15956495..15980936, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (15828756..15853179, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374948 Neighboring gene MPRA-validated peak5691 silencer Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:15855489-15856036 Neighboring gene MPRA-validated peak5692 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24088 Neighboring gene Sharpr-MPRA regulatory region 4250 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24089 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24090 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24091 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24092 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24093 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24094 Neighboring gene Sharpr-MPRA regulatory region 12068 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:15912456-15913115 Neighboring gene actin related protein 2/3 complex subunit 3 pseudogene 5 Neighboring gene Sharpr-MPRA regulatory region 8871 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24095 Neighboring gene Sharpr-MPRA regulatory region 12955 Neighboring gene long intergenic non-protein coding RNA 2543 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16954 Neighboring gene CRISPRi-validated cis-regulatory element chr6.836 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr6:16064773-16065514 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr6:16065515-16066255 Neighboring gene Sharpr-MPRA regulatory region 5392 Neighboring gene MDH1 pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    15956495..15980936 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_926532.3 RNA Sequence

  2. XR_007059479.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    15828756..15853179 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007076592.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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