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LGALSL-DT LGALSL divergent transcript [ Homo sapiens (human) ]

Gene ID: 105374771, updated on 10-Oct-2023

Summary

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Official Symbol
LGALSL-DTprovided by HGNC
Official Full Name
LGALSL divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:53951
See related
AllianceGenome:HGNC:53951
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
2p14
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (64390956..64454878, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (64400116..64464462, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene microRNA 4433b Neighboring gene microRNA 4433a Neighboring gene ribosomal protein L23a pseudogene 37 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15892 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:64631317-64631826 Neighboring gene uncharacterized LOC124907775 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11552 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11553 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11554 Neighboring gene galectin like Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:64711199-64712398 Neighboring gene Sharpr-MPRA regulatory region 8770 Neighboring gene long intergenic non-protein coding RNA 1805 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15893 Neighboring gene AFTPH divergent transcript

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Identification of aberrantly expressed long non-coding RNAs in postmenopausal osteoporosis. Fei Q, et al. Int J Mol Med, 2018 Jun. PMID 29568943, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    64390956..64454878 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_002959392.2 RNA Sequence

  2. XR_001739494.3 RNA Sequence

  3. XR_001739493.3 RNA Sequence

  4. XR_001739492.3 RNA Sequence

  5. XR_001739491.3 RNA Sequence

  6. XR_940167.4 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    64400116..64464462 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007072122.1 RNA Sequence

  2. XR_007072123.1 RNA Sequence

  3. XR_007072125.1 RNA Sequence

  4. XR_007072124.1 RNA Sequence

  5. XR_007072121.1 RNA Sequence

  6. XR_007072126.1 RNA Sequence

Nucleotide Protein
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