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LINC02160 long intergenic non-protein coding RNA 2160 [ Homo sapiens (human) ]

Gene ID: 105374716, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02160provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2160provided by HGNC
Primary source
HGNC:HGNC:53021
See related
Ensembl:ENSG00000251443 AllianceGenome:HGNC:53021
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in salivary gland (RPKM 1.3), liver (RPKM 0.2) and 1 other tissue See more
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Genomic context

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Location:
5p13.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (33229735..33255553)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (33344762..33370578)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (33229841..33255659)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374715 Neighboring gene NANOG hESC enhancer GRCh37_chr5:33008763-33009264 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:33092903-33093402 Neighboring gene ribosomal protein S8 pseudogene 8 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15961 Neighboring gene uncharacterized LOC124900637 Neighboring gene NANOG hESC enhancer GRCh37_chr5:33293474-33293975 Neighboring gene NANOG hESC enhancer GRCh37_chr5:33299775-33300300 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:33311980-33313179 Neighboring gene NANOG hESC enhancer GRCh37_chr5:33362859-33363522 Neighboring gene translation machinery-associated protein 7-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_147008.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BX485935
    Related
    ENST00000503577.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    33229735..33255553
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    33344762..33370578
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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