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LOC105374479 uncharacterized LOC105374479 [ Homo sapiens (human) ]

Gene ID: 105374479, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105374479
Gene description
uncharacterized LOC105374479
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
4p16.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (10785781..10789796)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374481 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21314 Neighboring gene cytokine dependent hematopoietic cell linker Neighboring gene uncharacterized LOC105374480 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:10664724-10664901 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21315 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21316 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21317 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21318 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21319 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21320 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15282 Neighboring gene long intergenic non-protein coding RNA 2498 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:10807763-10808962 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:10855215-10855716 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:10855717-10856216 Neighboring gene NANOG hESC enhancer GRCh37_chr4:10946361-10946898 Neighboring gene Sharpr-MPRA regulatory region 8730 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr4:10965707-10966380 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:11067600-11068246 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:11150486-11151153 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:11218597-11219141 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:11219142-11219685 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:11227260-11227455 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:11232380-11233128 Neighboring gene uncharacterized LOC105374488 Neighboring gene RNA binding protein with serine rich domain 1 pseudogene 1 Neighboring gene microRNA 572

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000004.12 Chromosome 4 Reference GRCh38.p14 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    10785781..10789796
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_925374.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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