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LINC01839 long intergenic non-protein coding RNA 1839 [ Homo sapiens (human) ]

Gene ID: 105374251, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01839provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1839provided by HGNC
Primary source
HGNC:HGNC:41330
See related
AllianceGenome:HGNC:41330
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
EIF2B5-IT1
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC01839 in Genome Data Viewer
Location:
3q27.1
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (184475900..184552863)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (187290014..187368350)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:184103787-184104288 Neighboring gene chordin Neighboring gene long intergenic non-protein coding RNA 2054 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:184134067-184134568 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:184183685-184184186 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:184184187-184184686 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:184208759-184209703 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:184209704-184210647 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:184231385-184231885 Neighboring gene transmembrane epididymal protein 3, pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:184242784-184243588 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:184243589-184244391 Neighboring gene long intergenic non-protein coding RNA 1840 Neighboring gene uncharacterized LOC124909469 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14968 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14969 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:184281553-184282305 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:184285640-184286154 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:184286155-184286667 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:184287010-184287956 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:184287957-184288903 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:184293707-184294309 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:184300020-184300586 Neighboring gene EPH receptor B3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

General gene information

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Other Names

  • EIF2B5 intronic transcript 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    184475900..184552863
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_924788.3 RNA Sequence

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187538.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    18092..57437 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007068609.1 RNA Sequence

  2. XR_951657.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    187290014..187368350
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007074032.1 RNA Sequence

Nucleotide Protein
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