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LOC105374101 uncharacterized LOC105374101 [ Homo sapiens (human) ]

Gene ID: 105374101, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105374101
Gene description
uncharacterized LOC105374101
See related
Ensembl:ENSG00000289469
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in thyroid (RPKM 1.4), fat (RPKM 1.2) and 24 other tissues See more
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Genomic context

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Location:
3q21.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (129184074..129196304)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (131928949..131941194)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene ISY1-RAB43 readthrough Neighboring gene ISY1 splicing factor homolog Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20503 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20504 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20505 Neighboring gene myotonic dystrophy type 2 repeat instability region Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20506 Neighboring gene CCHC-type zinc finger nucleic acid binding protein Neighboring gene NFE2L2 motif-containing MPRA enhancer 136 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:128931398-128931601 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:128937355-128938310 Neighboring gene ribosomal protein S27 pseudogene 12 Neighboring gene Sharpr-MPRA regulatory region 8233 Neighboring gene uncharacterized LOC105374102 Neighboring gene NANOG hESC enhancer GRCh37_chr3:128950251-128950752 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20507

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    129184074..129196304
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_924469.3 RNA Sequence

    Related
    ENST00000688670.2

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    131928949..131941194
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007073818.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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