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LOC105374088 uncharacterized LOC105374088 [ Homo sapiens (human) ]

Gene ID: 105374088, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105374088
Gene description
uncharacterized LOC105374088
See related
Ensembl:ENSG00000287440
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
3q21.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (126312360..126323523)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (129044710..129055986)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124909426 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:125932350-125932862 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:125977069-125977976 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:125985551-125986260 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:125986261-125986971 Neighboring gene uncharacterized LOC107986124 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:126006839-126007384 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:126007385-126007929 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:126010617-126011117 Neighboring gene MPRA-validated peak4813 silencer Neighboring gene KLF transcription factor 15 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:126050110-126050714 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:126050715-126051318 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:126060213-126060974 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:126062507-126063190 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:126074793-126075552 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:126075553-126076312 Neighboring gene NANOG hESC enhancer GRCh37_chr3:126081217-126081718 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14676 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:126094973-126095585 Neighboring gene uncharacterized LOC107986044 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:126108375-126108923 Neighboring gene CFAP100 divergent transcript

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    126312360..126323523
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_924454.4 RNA Sequence

    Related
    ENST00000652931.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    129044710..129055986
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007073797.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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