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LINC01891 long intergenic non-protein coding RNA 1891 [ Homo sapiens (human) ]

Gene ID: 105373934, updated on 10-Oct-2023

Summary

Official Symbol
LINC01891provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1891provided by HGNC
Primary source
HGNC:HGNC:52710
See related
Ensembl:ENSG00000231682 AllianceGenome:HGNC:52710
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in lymph node (RPKM 1.3), appendix (RPKM 1.0) and 4 other tissues See more
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Genomic context

See LINC01891 in Genome Data Viewer
Location:
2q37.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (234444590..234454595, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (234933722..234943760, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (235353234..235363239, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373933 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17352 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17353 Neighboring gene ribosomal protein S20 pseudogene 12 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:235271392-235272591 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:235276379-235276880 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:235276881-235277380 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:235311534-235312034 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:235336101-235337300 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:235339493-235340044 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17354 Neighboring gene heat shock protein family E (Hsp10) member 1 pseudogene 9 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12473 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12474 Neighboring gene ADP ribosylation factor like GTPase 4C

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146988.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC097713, DA977316
    Related
    ENST00000439798.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    234444590..234454595 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    234933722..234943760 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)