U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

PDE11A-AS1 PDE11A antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 105373764, updated on 10-Oct-2023

Summary

Official Symbol
PDE11A-AS1provided by HGNC
Official Full Name
PDE11A antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40433
See related
Ensembl:ENSG00000229941 AllianceGenome:HGNC:40433
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Location:
2q31.2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (177673322..177723289)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (178155590..178205558)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (178538050..178588017)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124906098 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16798 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16799 Neighboring gene intraflagellar transport 70A Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:178522304-178522804 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:178524216-178524860 Neighboring gene NANOG hESC enhancer GRCh37_chr2:178527523-178528025 Neighboring gene phosphodiesterase 11A Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:178596032-178596711 Neighboring gene Sharpr-MPRA regulatory region 15369 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16800 Neighboring gene NANOG hESC enhancer GRCh37_chr2:178662451-178663018 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:178695674-178696218 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_56479 Neighboring gene uncharacterized LOC124906099 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:178709260-178709994 Neighboring gene Sharpr-MPRA regulatory region 7527 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:178837354-178838022 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:178838023-178838691 Neighboring gene apoptosis inhibitor 5 pseudogene 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_136171.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC012499, AC073834
    Related
    ENST00000412133.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    177673322..177723289
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    178155590..178205558
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)