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LINC01889 long intergenic non-protein coding RNA 1889 [ Homo sapiens (human) ]

Gene ID: 105373597, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01889provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1889provided by HGNC
Primary source
HGNC:HGNC:52708
See related
AllianceGenome:HGNC:52708
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in urinary bladder (RPKM 1.4) and gall bladder (RPKM 1.3) See more
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Genomic context

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Location:
2q14.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (125710950..125793587)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (126148799..126230676)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene NANOG hESC enhancer GRCh37_chr2:125733153-125733654 Neighboring gene RNA, 5S ribosomal pseudogene 102 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:125752724-125753685 Neighboring gene RNA, U6 small nuclear 259, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:126179643-126180144 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:126180145-126180644 Neighboring gene uncharacterized LOC105373598 Neighboring gene uncharacterized LOC124900611 Neighboring gene MPRA-validated peak3850 silencer Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:126816617-126817305 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr2:126918657-126919158 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr2:126919159-126919658 Neighboring gene long intergenic non-protein coding RNA 1941 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:126940752-126941297 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:127065865-127066365 Neighboring gene SLC6A14 pseudogene 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

General gene information

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Clone Names

  • AC097499.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    125710950..125793587
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_923294.3 RNA Sequence

  2. XR_923295.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    126148799..126230676
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007071647.1 RNA Sequence

  2. XR_007071648.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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