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LOC105373347 periphilin-1 [ Homo sapiens (human) ]

Gene ID: 105373347, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105373347
Gene description
periphilin-1
See related
Ensembl:ENSG00000284377
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 1.9), kidney (RPKM 0.8) and 4 other tissues See more
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Genomic context

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Location:
Xq27.3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (147181049..147271895)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (145440594..145531738)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101928832 Neighboring gene kinesin family member 23 pseudogene Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:146101517-146102314 Neighboring gene microRNA 513c Neighboring gene microRNA 513b Neighboring gene microRNA 513a-1 Neighboring gene microRNA 513a-2 Neighboring gene microRNA 506 Neighboring gene microRNA 507 Neighboring gene microRNA 508 Neighboring gene microRNA 514b Neighboring gene microRNA 509-2 Neighboring gene microRNA 509-3 Neighboring gene microRNA 509-1 Neighboring gene microRNA 514a-1 Neighboring gene microRNA 510

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    147181049..147271895
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_005647084.2 RNA Sequence

  2. XR_938514.3 RNA Sequence

    Related
    ENST00000639829.1

  3. XR_005647083.2 RNA Sequence

  4. XR_005647087.2 RNA Sequence

    Related
    ENST00000701574.1

  5. XR_005647086.2 RNA Sequence

  6. XR_005647085.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    145440594..145531738
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007091123.1 RNA Sequence

  2. XR_007091127.1 RNA Sequence

  3. XR_007091122.1 RNA Sequence

  4. XR_007091126.1 RNA Sequence

  5. XR_007091125.1 RNA Sequence

  6. XR_007091124.1 RNA Sequence

Nucleotide Protein
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