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LINC02968 long intergenic non-protein coding RNA 2968 [ Homo sapiens (human) ]

Gene ID: 105373105, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02968provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2968provided by HGNC
Primary source
HGNC:HGNC:56008
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in spleen (RPKM 2.5), lymph node (RPKM 2.0) and 13 other tissues See more
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Genomic context

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Location:
X;Y
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (1732419..1755984)
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) Y NC_000024.10 (1732419..1755984)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (1529195..1554369)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene ReSE screen-validated silencer GRCh37_chrX:1727169-1727341 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrY:1678358-1678942 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrY:1678943-1679525 Neighboring gene A-kinase anchoring protein 17A Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chrX:1737403-1738040 Neighboring gene acetylserotonin O-methyltransferase Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrY:1718443-1718962 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:1776191-1776692 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:1776693-1777192 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrY:1747612-1748179 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrY:1778143-1778642 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:1883833-1884333 Neighboring gene uncharacterized LOC105379413 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrY:1935791-1936290 Neighboring gene uncharacterized LOC107985677

Chromosome Y - NC_000024.10Genomic Context describing neighboring genes Neighboring gene ReSE screen-validated silencer GRCh37_chrX:1727169-1727341 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrY:1678358-1678942 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrY:1678943-1679525 Neighboring gene A-kinase anchoring protein 17A Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chrX:1737403-1738040 Neighboring gene acetylserotonin O-methyltransferase Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrY:1718443-1718962 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:1776191-1776692 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:1776693-1777192 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrY:1747612-1748179 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrY:1778143-1778642 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:1883833-1884333 Neighboring gene uncharacterized LOC105379413 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrY:1935791-1936290 Neighboring gene uncharacterized LOC107985677

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

General gene information

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Clone Names

  • AL683807.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    1732419..1755984
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001755766.2 RNA Sequence

  2. XR_007068380.1 RNA Sequence

  3. XR_001755765.2 RNA Sequence

  4. XR_007068378.1 RNA Sequence

  5. XR_951292.2 RNA Sequence

  6. XR_007068379.1 RNA Sequence

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000024.10 Reference GRCh38.p14 Primary Assembly

    Range
    1732419..1755984
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001756035.2 RNA Sequence

  2. XR_007068480.1 RNA Sequence

  3. XR_007068478.1 RNA Sequence

  4. XR_007068477.1 RNA Sequence

  5. XR_950580.2 RNA Sequence

  6. XR_007068479.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    1529195..1554369
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007091068.1 RNA Sequence

  2. XR_007091065.1 RNA Sequence

  3. XR_007091064.1 RNA Sequence

  4. XR_007091063.1 RNA Sequence

  5. XR_007091067.1 RNA Sequence

  6. XR_007091066.1 RNA Sequence

Nucleotide Protein
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