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NHIP neuronal hypoxia inducible, placenta associated [ Homo sapiens (human) ]

Gene ID: 105373085, updated on 10-Oct-2023

Summary

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Official Symbol
NHIPprovided by HGNC
Official Full Name
neuronal hypoxia inducible, placenta associatedprovided by HGNC
Primary source
HGNC:HGNC:55561
See related
Ensembl:ENSG00000286381
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
22q13.32
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (49043919..49052385, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (49548357..49556823, complement)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:49191875-49192796 Neighboring gene microRNA 4535 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49232881-49233408 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49252199-49252698 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49264603-49265104 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49265105-49265604 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49267795-49268295 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_63550 Neighboring gene long intergenic non-protein coding RNA 1310 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49298268-49298768 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49315147-49315667 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_63573 Neighboring gene MPRA-validated peak4515 silencer Neighboring gene Sharpr-MPRA regulatory region 10948 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:49355769-49356614 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49411058-49411949 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49414603-49415102 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49416620-49417120 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49417121-49417621 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr22:49430339-49431262 Neighboring gene ReSE screen-validated silencer GRCh37_chr22:49444419-49444575 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19277 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49472572-49473132 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49473133-49473691 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr22:49479476-49480675 Neighboring gene uncharacterized LOC105373086 Neighboring gene ReSE screen-validated silencer GRCh37_chr22:49492353-49492524 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49492933-49493434 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49493435-49493934 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49494904-49495901 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_63615 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_63621 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:49546439-49546996 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:49548111-49548668 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49576267-49576766 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:49579645-49580415 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr22:49583849-49585048 Neighboring gene MPRA-validated peak4516 silencer Neighboring gene ribosomal protein L35 pseudogene 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Placental methylome reveals a 22q13.33 brain regulatory gene locus associated with autism. Zhu Y, et al. Genome Biol, 2022 Feb 16. PMID 35168652, Free PMC Article
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183575.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL078622

  2. NR_183576.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL078622
    Related
    ENST00000669789.1

  3. NR_183577.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL078622
    Related
    ENST00000657875.1

  4. NR_183578.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL078622

  5. NR_183579.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL078622

  6. NR_183580.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL078622
    Related
    ENST00000665699.1

  7. NR_183581.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL078622

  8. NR_183582.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL078622

  9. NR_183583.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL078622

  10. NR_183584.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL078622

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    49043919..49052385 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    49548357..49556823 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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