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SCUBE1-AS2 SCUBE1 antisense RNA 2 [ Homo sapiens (human) ]

Gene ID: 105373051, updated on 10-Oct-2023

Summary

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Official Symbol
SCUBE1-AS2provided by HGNC
Official Full Name
SCUBE1 antisense RNA 2provided by HGNC
Primary source
HGNC:HGNC:40633
See related
Ensembl:ENSG00000236272 AllianceGenome:HGNC:40633
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 2.4), lung (RPKM 0.3) and 1 other tissue See more
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Genomic context

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See SCUBE1-AS2 in Genome Data Viewer
Location:
22q13.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (43212674..43213661)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (43693575..43694562)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (43608680..43609667)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19186 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:43553089-43553609 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:43559052-43559555 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:43559556-43560058 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:43564214-43565070 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:43565071-43565926 Neighboring gene translocator protein Neighboring gene tubulin tyrosine ligase like 12 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:43581791-43582295 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19188 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13857 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13858 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13859 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:43593145-43594077 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:43594078-43595009 Neighboring gene signal peptide, CUB domain and EGF like domain containing 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:43616253-43616754 Neighboring gene ReSE screen-validated silencer GRCh37_chr22:43621086-43621251 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:43621872-43622438 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:43622439-43623004 Neighboring gene Sharpr-MPRA regulatory region 15411 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:43634226-43634726 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:43634727-43635227 Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:43643537-43644038 Neighboring gene ReSE screen-validated silencer GRCh37_chr22:43647561-43647749 Neighboring gene uncharacterized LOC124905129 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr22:43659412-43660611 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:43664742-43665530 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:43665531-43666317 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:43673726-43674226 Neighboring gene SCUBE1 antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:43678267-43678767

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_134632.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    DB341430, Z82214
    Related
    ENST00000420269.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    43212674..43213661
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    43693575..43694562
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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