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LOC105372980 uncharacterized LOC105372980 [ Homo sapiens (human) ]

Gene ID: 105372980, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105372980
Gene description
uncharacterized LOC105372980
See related
Ensembl:ENSG00000287034
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
22q12.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (27436292..27441934)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (27897188..27902830)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372979 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_63206 Neighboring gene Sharpr-MPRA regulatory region 9271 Neighboring gene uncharacterized LOC102724900 Neighboring gene NANOG hESC enhancer GRCh37_chr22:27754348-27754896 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr22:27769315-27769815 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:27803625-27804177 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:27828998-27829600 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:27833795-27834458 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:27857322-27858096 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr22:27870511-27871710 Neighboring gene uncharacterized LOC105372981 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:27937522-27938022 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:27938023-27938523 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:27957435-27957934 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:27969749-27970322 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:27971900-27972400 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:27972401-27972901 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:27987245-27987744 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:27999453-27999970 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:27999971-28000486 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:28026616-28027234 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:28029867-28030460 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:28033379-28033879 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:28034092-28034896 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:28034897-28035700 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:28037955-28038888 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:28050431-28050930 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:28063419-28063918 Neighboring gene Sharpr-MPRA regulatory regions 2672 and 6919 Neighboring gene uncharacterized LOC124905098 Neighboring gene cytoplasmic mesoderm regulator

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    27436292..27441934
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_938123.4 RNA Sequence

    Related
    ENST00000654206.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    27897188..27902830
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007090543.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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