U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC02257 long intergenic non-protein coding RNA 2257 [ Homo sapiens (human) ]

Gene ID: 105372950, updated on 1-Apr-2024

Summary

Go to the top of the page Help
Official Symbol
LINC02257provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2257provided by HGNC
Primary source
HGNC:HGNC:53159
See related
Ensembl:ENSG00000238042 AllianceGenome:HGNC:53159
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
1q41
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (221913645..221978520, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (221153839..221218680, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (222086987..222151862, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2559 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2560 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:221887070-221888269 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:221888831-221889360 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2561 Neighboring gene dual specificity phosphatase 10 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2562 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:221914501-221915138 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1830 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2563 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:221915139-221915776 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:221915777-221916414 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2566 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2567 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2568 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2569 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2570 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:222009541-222009747 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:222012693-222013892 Neighboring gene long intergenic non-protein coding RNA 1655 Neighboring gene uncharacterized LOC124904517 Neighboring gene RNA, U6 small nuclear 403, pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chr1:222029846-222030731 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2573 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:222138826-222139438 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:222144341-222144953 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:222144954-222145565 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:222145566-222146178 Neighboring gene 1q41 HERV-mediated proximal recombination region Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:222146179-222146790 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:222146791-222147403 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:222151877-222152619 Neighboring gene long intergenic non-protein coding RNA 2474 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2574 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr1:222182340-222182872 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:222222797-222223045 Neighboring gene long intergenic non-protein coding RNA 1705 Neighboring gene uncharacterized LOC124904518 Neighboring gene MPRA-validated peak711 silencer

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Experimental Study of lncRNA RP11-815M8.1 Promoting Osteogenic Differentiation of Human Bone Marrow Mesenchymal Stem Cells. Sun X, et al. Biomed Res Int, 2021. PMID 33855069, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

Go to the top of the page Help

Other Names

  • RP11-815M8.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_149057.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA564450, BX114699
    Related
    ENST00000412445.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    221913645..221978520 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    221153839..221218680 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases