U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

FAM247A family with sequence similarity 247 member A [ Homo sapiens (human) ]

Gene ID: 105372935, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
FAM247Aprovided by HGNC
Official Full Name
family with sequence similarity 247 member Aprovided by HGNC
Primary source
HGNC:HGNC:54926
See related
AllianceGenome:HGNC:54926
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in fat (RPKM 5.6), brain (RPKM 5.1) and 25 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
22q11.21
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (21192790..21203988, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (21602635..21613846, complement)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr22:21498806-21499306 Neighboring gene E2F transcription factor 6 pseudogene 2 Neighboring gene ReSE screen-validated silencer GRCh37_chr22:21507745-21507931 Neighboring gene MPRA-validated peak4462 silencer Neighboring gene MPRA-validated peak4464 silencer Neighboring gene family with sequence similarity 230 member B Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:21555249-21555931 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:21555932-21556613 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:21569798-21570298 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:21570299-21570799 Neighboring gene gamma-glutamyltransferase 2, pseudogene Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr22:21585968-21586526 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr22:21609011-21609708 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:21609709-21610404 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:21610405-21611102 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:21613263-21613765 Neighboring gene E2F transcription factor 6 pseudogene 3

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genesis of Non-Coding RNA Genes in Human Chromosome 22-A Sequence Connection with Protein Genes Separated by Evolutionary Time. Delihas N. Noncoding RNA, 2020 Sep 3. PMID 32899105, Free PMC Article
  2. Formation of human long intergenic non-coding RNA genes, pseudogenes, and protein genes: Ancestral sequences are key players. Delihas N. PLoS One, 2020. PMID 32214344, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_185501.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP000550

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    21192790..21203988 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    21602635..21613846 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases