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LOC105372509 uncharacterized LOC105372509 [ Homo sapiens (human) ]

Gene ID: 105372509, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105372509
Gene description
uncharacterized LOC105372509
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
20p13
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (3418395..3420788)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (3449317..3451709)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene dynein axonemal assembly factor 9 Neighboring gene UBE2V1 pseudogene 1 Neighboring gene small nucleolar RNA U3 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12618 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12619 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12620 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17478 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr20:3389216-3389717 Neighboring gene uncharacterized LOC105372508 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17479 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17480 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12621 Neighboring gene attractin Neighboring gene splicing factor 3a, subunit 3 pseudogene 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:3601641-3601840 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17481 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12622 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12623 Neighboring gene GDNF family receptor alpha 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    3418395..3420788
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001754709.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    3449317..3451709
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007089372.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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