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SEPTIN9-DT SEPTIN9 divergent transcript [ Homo sapiens (human) ]

Gene ID: 105371907, updated on 8-Nov-2023

Summary

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Official Symbol
SEPTIN9-DTprovided by HGNC
Official Full Name
SEPTIN9 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:52818
See related
Ensembl:ENSG00000263718 AllianceGenome:HGNC:52818
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
17q25.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (77273784..77281897, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (78167036..78175144, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (75269866..75277979, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene SEC14 like lipid binding 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12825 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12826 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:75213877-75214400 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:75217127-75217628 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:75217629-75218128 Neighboring gene CYCS pseudogene 40 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr17:75229305-75230504 Neighboring gene Sharpr-MPRA regulatory region 14112 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:75243257-75244107 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr17:75250208-75251407 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75253655-75254312 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75254313-75254968 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75262063-75262564 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75262565-75263064 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75275663-75276310 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:75277912-75278075 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr17:75281897-75283096 Neighboring gene lung adenocarcinoma-associated transcript 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75299804-75300691 Neighboring gene HNF4 motif-containing MPRA enhancer 212 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75304718-75305262 Neighboring gene septin 9 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75306143-75306644 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:75310435-75311270 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75312943-75313778 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:75316721-75316933 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:75319666-75319839 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12827 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12828 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:75322007-75322925 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75325959-75326536 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75326537-75327112 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12829 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75352605-75353106 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75359740-75360398 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75360399-75361055 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9034 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75371719-75372408 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12830 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75373534-75374144 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:75378629-75379166 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:75379167-75379704 Neighboring gene uncharacterized LOC124904062 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75385497-75386227 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:75387689-75388418 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:75388419-75389149 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:75389150-75389879 Neighboring gene microRNA 4316

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_136503.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC068594
    Related
    ENST00000581153.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    77273784..77281897 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NW_003315955.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    64677..72790 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    78167036..78175144 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases