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LINC01992 long intergenic non-protein coding RNA 1992 [ Homo sapiens (human) ]

Gene ID: 105371708, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01992provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1992provided by HGNC
Primary source
HGNC:HGNC:52824
See related
Ensembl:ENSG00000260019 AllianceGenome:HGNC:52824
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC01992 in Genome Data Viewer
Location:
17q11.2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (27928924..27991707, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (28870328..28933109, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (26255950..26318733, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124903961 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:26208991-26209681 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8330 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:26215109-26216060 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:26216061-26217012 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8331 Neighboring gene LYR motif containing 9 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:26241118-26241431 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr17:26242505-26243362 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11914 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11915 Neighboring gene uncharacterized LOC124903962 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:26284095-26284956 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr17:26286038-26286747 Neighboring gene Sharpr-MPRA regulatory region 4282 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11916 Neighboring gene CRISPRi-validated cis-regulatory element chr17.1404 Neighboring gene MPRA-validated peak2774 silencer Neighboring gene uncharacterized LOC124900402 Neighboring gene small nucleolar RNA SNORA70

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146896.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005697, AC090287
    Related
    ENST00000661257.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    27928924..27991707 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    28870328..28933109 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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