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LINC02816 long intergenic non-protein coding RNA 2816 [ Homo sapiens (human) ]

Gene ID: 105371638, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02816provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2816provided by HGNC
Primary source
HGNC:HGNC:54348
See related
AllianceGenome:HGNC:54348
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
1q25.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (180906592..180914056)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (180261796..180269263)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene xenotropic and polytropic retrovirus receptor 1 Neighboring gene uncharacterized LOC124904687 Neighboring gene MPRA-validated peak488 silencer Neighboring gene MPRA-validated peak489 silencer Neighboring gene uncharacterized LOC124904464 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:180866978-180867370 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:180868044-180868872 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1596 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2165 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:180892213-180893094 Neighboring gene KIAA1614 Neighboring gene uncharacterized LOC107985231 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:180910063-180911042 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:180918561-180919111 Neighboring gene KIAA1614 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1597 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:180923653-180924258

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_185877.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL162431

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    180906592..180914056
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    180261796..180269263
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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