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THBS3-AS1 THBS3 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 105371450, updated on 10-Oct-2023

Summary

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Official Symbol
THBS3-AS1provided by HGNC
Official Full Name
THBS3 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40582
See related
Ensembl:ENSG00000231064 AllianceGenome:HGNC:40582
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Annotation information
Note: This gene has been reviewed for its involvement in coronavirus biology, and is locus in the vicinity of disease-associated variant(s).
Expression
Ubiquitous expression in testis (RPKM 5.9), endometrium (RPKM 5.8) and 25 other tissues See more
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Genomic context

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Location:
1q22
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (155194997..155205489)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (154333560..154344052)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:155146052-155146560 Neighboring gene Sharpr-MPRA regulatory region 7923 Neighboring gene tripartite motif containing 46 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:155157269-155157776 Neighboring gene mucin 1, cell surface associated Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1397 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:155165957-155166792 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:155166793-155167628 Neighboring gene microRNA 92b Neighboring gene thrombospondin 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:155176689-155177472 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1398 Neighboring gene GBAP1 recombination region Neighboring gene metaxin 1 Neighboring gene glucosylceramidase beta 1 like, pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:155196727-155197304 Neighboring gene GBA recombination region Neighboring gene metaxin 1 like, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. A first update on mapping the human genetic architecture of COVID-19. COVID-19 Host Genetics Initiative. Nature, 2022 Aug. PMID 35922517, Free PMC Article
  2. Whole-genome sequencing reveals host factors underlying critical COVID-19. Kousathanas A, et al. Nature, 2022 Jul. PMID 35255492, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183234.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC234582
    Related
    ENST00000422665.2

  2. NR_183235.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC234582
    Related
    ENST00000701341.1

  3. NR_183236.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC234582
    Related
    ENST00000685687.1

  4. NR_183237.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC234582

  5. NR_183238.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC234582
    Related
    ENST00000702355.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    155194997..155205489
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    154333560..154344052
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases