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CDH13-AS1 CDH13 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 105371368, updated on 10-Oct-2023

Summary

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Official Symbol
CDH13-AS1provided by HGNC
Official Full Name
CDH13 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:55989
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See CDH13-AS1 in Genome Data Viewer
Location:
16q23.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (83383124..83399509, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (89448115..89464506, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene cadherin 13 Neighboring gene uncharacterized LOC124903733 Neighboring gene uncharacterized LOC101928417 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:83040047-83040230 Neighboring gene NANOG hESC enhancer GRCh37_chr16:83148253-83148855 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr16:83377629-83378828 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11230 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:83544199-83544719 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr16:83566380-83567579 Neighboring gene NANOG hESC enhancer GRCh37_chr16:83580087-83580647 Neighboring gene microRNA 3182 Neighboring gene uncharacterized LOC124900603 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:83714283-83714784 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:83714785-83715284 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr16:83716515-83717015

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Regulatory effects of the long non‑coding RNA RP11‑543N12.1 and microRNA‑324‑3p axis on the neuronal apoptosis induced by the inflammatory reactions of microglia. Cai M, et al. Int J Mol Med, 2018 Sep. PMID 29956723

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. RP11543N12.1 and miR3243p may be potential biomarkers and therapeutic targets for Alzheimer's disease.
    Title: Regulatory effects of the long non‑coding RNA RP11‑543N12.1 and microRNA‑324‑3p axis on the neuronal apoptosis induced by the inflammatory reactions of microglia.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

General gene information

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Other Names

  • RP11-543N12.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    83383124..83399509 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007065144.1 RNA Sequence

  2. XR_007065145.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    89448115..89464506 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007086714.1 RNA Sequence

  2. XR_007086715.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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