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LOC105370969 uncharacterized LOC105370969 [ Homo sapiens (human) ]

Gene ID: 105370969, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105370969
Gene description
uncharacterized LOC105370969
See related
Ensembl:ENSG00000259704
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
15q26.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (90839726..90853629)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (88599173..88613194)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene CRTC3 antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:91203621-91204149 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10084 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10085 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10086 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6825 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10088 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10087 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6826 Neighboring gene long intergenic non-protein coding RNA 1585 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10089 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:91226288-91226788 Neighboring gene BLM RecQ like helicase Neighboring gene small nucleolar RNA SNORD18 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6827 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:91359631-91360462 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:91360463-91361292 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:91368815-91369414 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10090 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:91383569-91384223 Neighboring gene Sharpr-MPRA regulatory region 4312 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:91388069-91388685 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10092 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10093 Neighboring gene RNA, 7SL, cytoplasmic 363, pseudogene Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr15:91412350-91413549 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6828 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6829 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10096 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10097 Neighboring gene furin, paired basic amino acid cleaving enzyme

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

General gene information

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Other Names

  • CTD-3094K11.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    90839726..90853629
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_932610.3 RNA Sequence

    Related
    ENST00000653647.1

  2. XR_932609.3 RNA Sequence

  3. XR_001751655.2 RNA Sequence

    Related
    ENST00000558221.2

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    88599173..88613194
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007085335.1 RNA Sequence

  2. XR_007085334.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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