U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC02252 long intergenic non-protein coding RNA 2252 [ Homo sapiens (human) ]

Gene ID: 105370762, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
LINC02252provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2252provided by HGNC
Primary source
HGNC:HGNC:53150
See related
AllianceGenome:HGNC:53150
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
15q14
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (34651135..34655764, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (32456539..32461171, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (34943336..34947965, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene golgin A8 family member B Neighboring gene amyloid beta precursor protein binding family A member 2 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:34861909-34862858 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6289 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6290 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6291 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:34876125-34876626 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:34876627-34877127 Neighboring gene MPRA-validated peak2294 silencer Neighboring gene Sharpr-MPRA regulatory region 9988 Neighboring gene uncharacterized LOC124903462 Neighboring gene Sharpr-MPRA regulatory region 12620 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr15:34974212-34975411 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:35013869-35014370 Neighboring gene uncharacterized LOC124903463 Neighboring gene gap junction protein delta 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

Go to the top of the page Help

Other Names

  • CTD-2125J1.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146869.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA496136, AA496137, AC100834

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    34651135..34655764 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    32456539..32461171 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases